Creating command-line Tools¶
[1]:
from ctapipe.core import Tool, Component, TelescopeComponent
from ctapipe.core.traits import (
Integer,
Float,
List,
Dict,
Unicode,
TraitError,
observe,
FloatTelescopeParameter,
Path,
)
import logging
from time import sleep
from astropy import units as u
from ctapipe.utils import get_dataset_path
[2]:
GAMMA_FILE = get_dataset_path("gamma_prod5.simtel.zst")
see https://github.com/ipython/traitlets/blob/master/examples/myapp.py
Setup:¶
Create a few Components that we will use later in a Tool:
[3]:
class MyComponent(Component):
"""A Component that does stuff"""
value = Integer(default_value=-1, help="Value to use").tag(config=True)
def do_thing(self):
self.log.debug("Did thing")
# in order to have 2 of the same components at once
class SecondaryMyComponent(MyComponent):
pass
class AdvancedComponent(Component):
"""An advanced technique"""
value1 = Integer(default_value=-1, help="Value to use").tag(config=True)
infile = Path(
help="input file name",
exists=None, # set to True to require existing, False for requiring non-existing
directory_ok=False,
).tag(config=True)
outfile = Path(help="output file name", exists=False, directory_ok=False).tag(
config=True
)
def __init__(self, config=None, parent=None, **kwargs):
super().__init__(config=config, parent=parent, **kwargs)
# components can have sub components, but these must have
# then parent=self as argument and be assigned as member
# so the full config can be received later
self.subcompent = MyComponent(parent=self)
@observe("outfile")
def on_outfile_changed(self, change):
self.log.warning("Outfile was changed to '{}'".format(change))
class TelescopeWiseComponent(TelescopeComponent):
"""a component that contains parameters that are per-telescope configurable"""
param = FloatTelescopeParameter(
help="Something configurable with telescope patterns", default_value=5.0
).tag(config=True)
[4]:
MyComponent()
[4]:
MyComponent
A Component that does stuff
| value | -1 | Value to use (default: -1) |
|---|
[5]:
AdvancedComponent(infile="test.foo", outfile="out.foo")
Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/out.foo'), 'owner': <__main__.AdvancedComponent object at 0x7f51df92ea90>, 'type': 'change'}'
[5]:
AdvancedComponent
An advanced technique
| infile | / |
input file name (default: traitlets.Undefined) |
|---|---|---|
| outfile | / |
output file name (default: traitlets.Undefined) |
| value1 | -1 | Value to use (default: -1) |
TelescopeComponents need to have a subarray given to them in order to work (since they need one to turn a TelescopeParameter into a concrete list of values for each telescope. Here we will give a dummy one:
[6]:
from ctapipe.instrument import SubarrayDescription, TelescopeDescription
subarray = SubarrayDescription.read(GAMMA_FILE)
subarray.info()
Subarray : MonteCarloArray
Num Tels : 180
Footprint: 4.92 km2
Type Count Tel IDs
----------------- ----- ---------------
SST_ASTRI_CHEC 120 30-99,131-180
LST_LST_LSTCam 4 1-4
MST_MST_FlashCam 28 5-29,125-127
MST_MST_NectarCam 28 100-124,128-130
[7]:
TelescopeWiseComponent(subarray=subarray)
[7]:
TelescopeWiseComponent
a component that contains parameters that are per-telescope configurable
| param | [('type', '*', 5.0)] | Something configurable with telescope patterns (default: traitlets.Undefined) |
|---|
This TelescopeParameters can then be set using a list of patterns like:
component.param = [
("type", "LST*",3.0),
("type", "MST*", 2.0),
(id, 25, 4.0)
]
These get translated into per-telescope-id values once the subarray is registered. After that one acccess the per-telescope id values via:
component.param.tel[tel_id]
Now create an executable Tool that contains the Components¶
[8]:
class MyTool(Tool):
name = "mytool"
description = "do some things and stuff"
aliases = dict(
infile="AdvancedComponent.infile",
outfile="AdvancedComponent.outfile",
iterations="MyTool.iterations",
)
# Which classes are registered for configuration
classes = [
MyComponent,
AdvancedComponent,
SecondaryMyComponent,
TelescopeWiseComponent,
]
# local configuration parameters
iterations = Integer(5, help="Number of times to run", allow_none=False).tag(
config=True
)
def setup(self):
self.comp = MyComponent(parent=self)
self.comp2 = SecondaryMyComponent(parent=self)
self.comp3 = TelescopeWiseComponent(parent=self, subarray=subarray)
self.advanced = AdvancedComponent(parent=self)
def start(self):
self.log.info("Performing {} iterations...".format(self.iterations))
for ii in range(self.iterations):
self.log.info("ITERATION {}".format(ii))
self.comp.do_thing()
self.comp2.do_thing()
sleep(0.1)
def finish(self):
self.log.warning("Shutting down.")
Get Help info¶
The following allows you to print the help info within a Jupyter notebook, but this same inforamtion would be displayed if the user types:
mytool --help
[9]:
tool = MyTool()
tool
[9]:
MyTool
do some things and stuff
| config_files | [] | (default: traitlets.Undefined) |
|---|---|---|
| iterations | 5 | Number of times to run (default: 5) |
| log_config | {} | (default: traitlets.Undefined) |
| log_datefmt | %Y-%m-%d %H:%M:%S | The date format used by logging formatters for %(asctime)s (default: %Y-%m-%d %H:%M:%S) |
| log_file | None | Filename for the log (default: None) |
| log_file_level | INFO | Logging Level for File Logging (default: INFO) |
| log_format | [%(name)s]%(highlevel)s %(message)s | The Logging format template (default: [%(name)s]%(highlevel)s %(message)s) |
| log_level | 30 | Set the log level by value or name. (default: 30) |
| logging_config | {} |
Configure additional log handlers.
The default stderr logs handler is configured by the
log_level, log_datefmt and log_format settings.
This configuration can be used to configure additional handlers
(e.g. to output the log to a file) or for finer control over the
default handlers.
If provided this should be a logging configuration dictionary, for
more information see:
https://docs.python.org/3/library/logging.config.html#logging-config-dictschema
This dictionary is merged with the base logging configuration which
defines the following:
* A logging formatter intended for interactive use called
``console``.
* A logging handler that writes to stderr called
``console`` which uses the formatter ``console``.
* A logger with the name of this application set to ``DEBUG``
level.
This example adds a new handler that writes to a file:
.. code-block:: python
c.Application.logging_config = {
'handlers': {
'file': {
'class': 'logging.FileHandler',
'level': 'DEBUG',
'filename': ' |
| provenance_log | / |
(default: traitlets.Undefined) |
| quiet | False | (default: False) |
| show_config | False | Instead of starting the Application, dump configuration to stdout (default: False) |
| show_config_json | False | Instead of starting the Application, dump configuration to stdout (as JSON) (default: False) |
Components: MyTool, MyComponent, AdvancedComponent, SecondaryMyComponent, TelescopeWiseComponent
[10]:
tool.print_help()
do some things and stuff
Options
=======
The options below are convenience aliases to configurable class-options,
as listed in the "Equivalent to" description-line of the aliases.
To see all configurable class-options for some <cmd>, use:
<cmd> --help-all
--debug
Set log-level to debug, for the most verbose logging.
Equivalent to: [--Application.log_level=10]
--show-config
Show the application's configuration (human-readable format)
Equivalent to: [--Application.show_config=True]
--show-config-json
Show the application's configuration (json format)
Equivalent to: [--Application.show_config_json=True]
-q, --quiet
Disable console logging.
Equivalent to: [--Tool.quiet=True]
-v, --verbose
Set log level to DEBUG
Equivalent to: [--Tool.log_level=DEBUG]
-c, --config=<list-item-1>...
Default: []
Equivalent to: [--Tool.config_files]
--log-level=<Enum>
Set the log level by value or name.
Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']
Default: 30
Equivalent to: [--Tool.log_level]
-l, --log-file=<Path>
Filename for the log
Default: None
Equivalent to: [--Tool.log_file]
--log-file-level=<Enum>
Logging Level for File Logging
Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']
Default: 'INFO'
Equivalent to: [--Tool.log_file_level]
--provenance-log=<Path>
Default: traitlets.Undefined
Equivalent to: [--Tool.provenance_log]
--infile=<Path>
input file name
Default: traitlets.Undefined
Equivalent to: [--AdvancedComponent.infile]
--outfile=<Path>
output file name
Default: traitlets.Undefined
Equivalent to: [--AdvancedComponent.outfile]
--iterations=<Int>
Number of times to run
Default: 5
Equivalent to: [--MyTool.iterations]
To see all available configurables, use `--help-all`.
The following is equivalant to the user typing mytool --help-all
[11]:
tool.print_help(classes=True)
do some things and stuff
Options
=======
The options below are convenience aliases to configurable class-options,
as listed in the "Equivalent to" description-line of the aliases.
To see all configurable class-options for some <cmd>, use:
<cmd> --help-all
--debug
Set log-level to debug, for the most verbose logging.
Equivalent to: [--Application.log_level=10]
--show-config
Show the application's configuration (human-readable format)
Equivalent to: [--Application.show_config=True]
--show-config-json
Show the application's configuration (json format)
Equivalent to: [--Application.show_config_json=True]
-q, --quiet
Disable console logging.
Equivalent to: [--Tool.quiet=True]
-v, --verbose
Set log level to DEBUG
Equivalent to: [--Tool.log_level=DEBUG]
-c, --config=<list-item-1>...
Default: []
Equivalent to: [--Tool.config_files]
--log-level=<Enum>
Set the log level by value or name.
Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']
Default: 30
Equivalent to: [--Tool.log_level]
-l, --log-file=<Path>
Filename for the log
Default: None
Equivalent to: [--Tool.log_file]
--log-file-level=<Enum>
Logging Level for File Logging
Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']
Default: 'INFO'
Equivalent to: [--Tool.log_file_level]
--provenance-log=<Path>
Default: traitlets.Undefined
Equivalent to: [--Tool.provenance_log]
--infile=<Path>
input file name
Default: traitlets.Undefined
Equivalent to: [--AdvancedComponent.infile]
--outfile=<Path>
output file name
Default: traitlets.Undefined
Equivalent to: [--AdvancedComponent.outfile]
--iterations=<Int>
Number of times to run
Default: 5
Equivalent to: [--MyTool.iterations]
Class options
=============
The command-line option below sets the respective configurable class-parameter:
--Class.parameter=value
This line is evaluated in Python, so simple expressions are allowed.
For instance, to set `C.a=[0,1,2]`, you may type this:
--C.a='range(3)'
Application(SingletonConfigurable) options
------------------------------------------
--Application.log_datefmt=<Unicode>
The date format used by logging formatters for %(asctime)s
Default: '%Y-%m-%d %H:%M:%S'
--Application.log_format=<Unicode>
The Logging format template
Default: '[%(name)s]%(highlevel)s %(message)s'
--Application.log_level=<Enum>
Set the log level by value or name.
Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']
Default: 30
--Application.logging_config=<key-1>=<value-1>...
Configure additional log handlers.
The default stderr logs handler is configured by the log_level, log_datefmt
and log_format settings.
This configuration can be used to configure additional handlers (e.g. to
output the log to a file) or for finer control over the default handlers.
If provided this should be a logging configuration dictionary, for more
information see:
https://docs.python.org/3/library/logging.config.html#logging-config-
dictschema
This dictionary is merged with the base logging configuration which defines
the following:
* A logging formatter intended for interactive use called
``console``.
* A logging handler that writes to stderr called
``console`` which uses the formatter ``console``.
* A logger with the name of this application set to ``DEBUG``
level.
This example adds a new handler that writes to a file:
.. code-block:: python
c.Application.logging_config = {
'handlers': {
'file': {
'class': 'logging.FileHandler',
'level': 'DEBUG',
'filename': '<path/to/file>',
}
},
'loggers': {
'<application-name>': {
'level': 'DEBUG',
# NOTE: if you don't list the default "console"
# handler here then it will be disabled
'handlers': ['console', 'file'],
},
}
}
Default: {}
--Application.show_config=<Bool>
Instead of starting the Application, dump configuration to stdout
Default: False
--Application.show_config_json=<Bool>
Instead of starting the Application, dump configuration to stdout (as JSON)
Default: False
Tool(Application) options
-------------------------
--Tool.config_files=<list-item-1>...
Default: []
--Tool.log_config=<key-1>=<value-1>...
Default: {}
--Tool.log_datefmt=<Unicode>
The date format used by logging formatters for %(asctime)s
Default: '%Y-%m-%d %H:%M:%S'
--Tool.log_file=<Path>
Filename for the log
Default: None
--Tool.log_file_level=<Enum>
Logging Level for File Logging
Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']
Default: 'INFO'
--Tool.log_format=<Unicode>
The Logging format template
Default: '[%(name)s]%(highlevel)s %(message)s'
--Tool.log_level=<Enum>
Set the log level by value or name.
Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']
Default: 30
--Tool.logging_config=<key-1>=<value-1>...
Configure additional log handlers.
The default stderr logs handler is configured by the log_level, log_datefmt
and log_format settings.
This configuration can be used to configure additional handlers (e.g. to
output the log to a file) or for finer control over the default handlers.
If provided this should be a logging configuration dictionary, for more
information see:
https://docs.python.org/3/library/logging.config.html#logging-config-
dictschema
This dictionary is merged with the base logging configuration which defines
the following:
* A logging formatter intended for interactive use called
``console``.
* A logging handler that writes to stderr called
``console`` which uses the formatter ``console``.
* A logger with the name of this application set to ``DEBUG``
level.
This example adds a new handler that writes to a file:
.. code-block:: python
c.Application.logging_config = {
'handlers': {
'file': {
'class': 'logging.FileHandler',
'level': 'DEBUG',
'filename': '<path/to/file>',
}
},
'loggers': {
'<application-name>': {
'level': 'DEBUG',
# NOTE: if you don't list the default "console"
# handler here then it will be disabled
'handlers': ['console', 'file'],
},
}
}
Default: {}
--Tool.provenance_log=<Path>
Default: traitlets.Undefined
--Tool.quiet=<Bool>
Default: False
--Tool.show_config=<Bool>
Instead of starting the Application, dump configuration to stdout
Default: False
--Tool.show_config_json=<Bool>
Instead of starting the Application, dump configuration to stdout (as JSON)
Default: False
MyTool(Tool) options
--------------------
--MyTool.config_files=<list-item-1>...
Default: []
--MyTool.iterations=<Int>
Number of times to run
Default: 5
--MyTool.log_config=<key-1>=<value-1>...
Default: {}
--MyTool.log_datefmt=<Unicode>
The date format used by logging formatters for %(asctime)s
Default: '%Y-%m-%d %H:%M:%S'
--MyTool.log_file=<Path>
Filename for the log
Default: None
--MyTool.log_file_level=<Enum>
Logging Level for File Logging
Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']
Default: 'INFO'
--MyTool.log_format=<Unicode>
The Logging format template
Default: '[%(name)s]%(highlevel)s %(message)s'
--MyTool.log_level=<Enum>
Set the log level by value or name.
Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']
Default: 30
--MyTool.logging_config=<key-1>=<value-1>...
Configure additional log handlers.
The default stderr logs handler is configured by the log_level, log_datefmt
and log_format settings.
This configuration can be used to configure additional handlers (e.g. to
output the log to a file) or for finer control over the default handlers.
If provided this should be a logging configuration dictionary, for more
information see:
https://docs.python.org/3/library/logging.config.html#logging-config-
dictschema
This dictionary is merged with the base logging configuration which defines
the following:
* A logging formatter intended for interactive use called
``console``.
* A logging handler that writes to stderr called
``console`` which uses the formatter ``console``.
* A logger with the name of this application set to ``DEBUG``
level.
This example adds a new handler that writes to a file:
.. code-block:: python
c.Application.logging_config = {
'handlers': {
'file': {
'class': 'logging.FileHandler',
'level': 'DEBUG',
'filename': '<path/to/file>',
}
},
'loggers': {
'<application-name>': {
'level': 'DEBUG',
# NOTE: if you don't list the default "console"
# handler here then it will be disabled
'handlers': ['console', 'file'],
},
}
}
Default: {}
--MyTool.provenance_log=<Path>
Default: traitlets.Undefined
--MyTool.quiet=<Bool>
Default: False
--MyTool.show_config=<Bool>
Instead of starting the Application, dump configuration to stdout
Default: False
--MyTool.show_config_json=<Bool>
Instead of starting the Application, dump configuration to stdout (as JSON)
Default: False
MyComponent(Component) options
------------------------------
--MyComponent.value=<Int>
Value to use
Default: -1
AdvancedComponent(Component) options
------------------------------------
--AdvancedComponent.infile=<Path>
input file name
Default: traitlets.Undefined
--AdvancedComponent.outfile=<Path>
output file name
Default: traitlets.Undefined
--AdvancedComponent.value1=<Int>
Value to use
Default: -1
SecondaryMyComponent(MyComponent) options
-----------------------------------------
--SecondaryMyComponent.value=<Int>
Value to use
Default: -1
TelescopeWiseComponent(TelescopeComponent) options
--------------------------------------------------
--TelescopeWiseComponent.param=<floattelescopeparameter-item-1>...
Something configurable with telescope patterns
Default: [('type', '*', 5.0)]
Run the tool¶
here we pass in argv since it is a Notebook, but if argv is not specified it’s read from sys.argv, so the following is the same as running:
mytool --log_level=INFO --infile gamma_test.simtel.gz --iterations=3
As Tools are intended to be exectutables, they are raising SystemExit on exit. Here, we use them to demonstrate how it would work, so we catch the SystemExit.
[12]:
try:
tool.run(argv=["--infile", str(GAMMA_FILE), "--outfile", "out.csv"])
except SystemExit as e:
assert e.code == 0, f"Tool returned with error status {e}"
2022-10-25 09:45:33,252 WARNING [__main__.mytool.AdvancedComponent] (1780252035.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7f51d26a05e0>, 'type': 'change'}'
2022-10-25 09:45:33,756 WARNING [__main__.mytool] (462504653.finish): Shutting down.
[13]:
tool.log_format = "%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s"
try:
tool.run(
argv=[
"--log-level",
"INFO",
"--infile",
str(GAMMA_FILE),
"--outfile",
"out.csv",
"--iterations",
"3",
]
)
except SystemExit as e:
assert e.code == 0, f"Tool returned with error status {e}"
2022-10-25 09:45:33,786 INFO [__main__.mytool] (tool.initialize): Loading config from '[]'
2022-10-25 09:45:33,792 INFO [__main__.mytool] (tool.initialize): ctapipe version 0.17.0
2022-10-25 09:45:33,792 INFO [__main__.mytool] (tool.run): Starting: mytool
2022-10-25 09:45:33,811 WARNING [__main__.mytool.AdvancedComponent] (1780252035.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7f51d27536a0>, 'type': 'change'}'
2022-10-25 09:45:33,814 INFO [__main__.mytool] (462504653.start): Performing 3 iterations...
2022-10-25 09:45:33,814 INFO [__main__.mytool] (462504653.start): ITERATION 0
2022-10-25 09:45:33,916 INFO [__main__.mytool] (462504653.start): ITERATION 1
2022-10-25 09:45:34,017 INFO [__main__.mytool] (462504653.start): ITERATION 2
2022-10-25 09:45:34,117 WARNING [__main__.mytool] (462504653.finish): Shutting down.
2022-10-25 09:45:34,118 INFO [__main__.mytool] (tool.run): Finished: mytool
2022-10-25 09:45:34,121 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:34,122 INFO [__main__.mytool] (tool.write_provenance): Output:
here we change the log-level to DEBUG:
[14]:
try:
tool.run(
argv=[
"--log-level",
"DEBUG",
"--infile",
str(GAMMA_FILE),
"--outfile",
"out.csv",
]
)
except SystemExit as e:
assert e.code == 0, f"Tool returned with error status {e}"
2022-10-25 09:45:34,146 INFO [__main__.mytool] (tool.initialize): Loading config from '[]'
2022-10-25 09:45:34,149 DEBUG [__main__.mytool] (application._config_changed): Config changed: {'AdvancedComponent': {'infile': '/home/docs/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-extra/v0.3.4/gamma_prod5.simtel.zst', 'outfile': 'out.csv'}, 'attach_subarray': <LazyConfigValue {}>, 'MyTool': {'log_level': 'DEBUG', 'iterations': 3}}
2022-10-25 09:45:34,152 INFO [__main__.mytool] (tool.initialize): ctapipe version 0.17.0
2022-10-25 09:45:34,153 INFO [__main__.mytool] (tool.run): Starting: mytool
2022-10-25 09:45:34,172 WARNING [__main__.mytool.AdvancedComponent] (1780252035.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7f51d26a08e0>, 'type': 'change'}'
2022-10-25 09:45:34,175 DEBUG [__main__.mytool] (tool.run): CONFIG: {'MyTool': {'config_files': [], 'iterations': 3, 'log_config': {}, 'log_datefmt': '%Y-%m-%d %H:%M:%S', 'log_file': None, 'log_file_level': 'INFO', 'log_format': '%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s', 'log_level': 10, 'logging_config': {}, 'provenance_log': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/mytool.provenance.log'), 'quiet': False, 'show_config': False, 'show_config_json': False, 'MyComponent': {'value': -1}, 'SecondaryMyComponent': {'value': -1}, 'TelescopeWiseComponent': {'param': [('type', '*', 5.0)]}, 'AdvancedComponent': {'infile': PosixPath('/home/docs/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-extra/v0.3.4/gamma_prod5.simtel.zst'), 'outfile': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/out.csv'), 'value1': -1, 'MyComponent': {'value': -1}}}}
2022-10-25 09:45:34,176 INFO [__main__.mytool] (462504653.start): Performing 3 iterations...
2022-10-25 09:45:34,178 INFO [__main__.mytool] (462504653.start): ITERATION 0
2022-10-25 09:45:34,179 DEBUG [__main__.mytool.MyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,181 DEBUG [__main__.mytool.SecondaryMyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,281 INFO [__main__.mytool] (462504653.start): ITERATION 1
2022-10-25 09:45:34,282 DEBUG [__main__.mytool.MyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,284 DEBUG [__main__.mytool.SecondaryMyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,385 INFO [__main__.mytool] (462504653.start): ITERATION 2
2022-10-25 09:45:34,386 DEBUG [__main__.mytool.MyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,387 DEBUG [__main__.mytool.SecondaryMyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,488 WARNING [__main__.mytool] (462504653.finish): Shutting down.
2022-10-25 09:45:34,489 INFO [__main__.mytool] (tool.run): Finished: mytool
2022-10-25 09:45:34,492 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:34,492 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:34,494 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:34,499 DEBUG [__main__.mytool] (tool.write_provenance): PROVENANCE: '[
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"MyComponent": {
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]'
2022-10-25 09:45:34,506 DEBUG [__main__.mytool] (application.exit): Exiting application: mytool
you can also set parameters directly in the class, rather than using the argument/configfile parser. This is useful if you are calling the Tool from a script rather than the command-line
[15]:
tool.iterations = 1
tool.log_level = 0
try:
tool.run(["--infile", str(GAMMA_FILE), "--outfile", "out.csv"])
except SystemExit as e:
assert e.code == 0, f"Tool returned with error status {e}"
2022-10-25 09:45:34,525 DEBUG [__main__.mytool] (application._config_changed): Config changed: {'AdvancedComponent': {'infile': '/home/docs/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-extra/v0.3.4/gamma_prod5.simtel.zst', 'outfile': 'out.csv'}, 'attach_subarray': <LazyConfigValue {}>, 'MyTool': {'log_level': 'DEBUG', 'iterations': 3}}
2022-10-25 09:45:34,527 INFO [__main__.mytool] (tool.initialize): Loading config from '[]'
2022-10-25 09:45:34,530 DEBUG [__main__.mytool] (application._config_changed): Config changed: {'AdvancedComponent': {'infile': '/home/docs/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-extra/v0.3.4/gamma_prod5.simtel.zst', 'outfile': 'out.csv'}, 'attach_subarray': <LazyConfigValue {}>, 'MyTool': {'log_level': 'DEBUG', 'iterations': 3}}
2022-10-25 09:45:34,532 INFO [__main__.mytool] (tool.initialize): ctapipe version 0.17.0
2022-10-25 09:45:34,533 INFO [__main__.mytool] (tool.run): Starting: mytool
2022-10-25 09:45:34,567 WARNING [__main__.mytool.AdvancedComponent] (1780252035.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7f51d2753c70>, 'type': 'change'}'
2022-10-25 09:45:34,569 DEBUG [__main__.mytool] (tool.run): CONFIG: {'MyTool': {'config_files': [], 'iterations': 3, 'log_config': {}, 'log_datefmt': '%Y-%m-%d %H:%M:%S', 'log_file': None, 'log_file_level': 'INFO', 'log_format': '%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s', 'log_level': 10, 'logging_config': {}, 'provenance_log': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/mytool.provenance.log'), 'quiet': False, 'show_config': False, 'show_config_json': False, 'MyComponent': {'value': -1}, 'SecondaryMyComponent': {'value': -1}, 'TelescopeWiseComponent': {'param': [('type', '*', 5.0)]}, 'AdvancedComponent': {'infile': PosixPath('/home/docs/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-extra/v0.3.4/gamma_prod5.simtel.zst'), 'outfile': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/out.csv'), 'value1': -1, 'MyComponent': {'value': -1}}}}
2022-10-25 09:45:34,571 INFO [__main__.mytool] (462504653.start): Performing 3 iterations...
2022-10-25 09:45:34,572 INFO [__main__.mytool] (462504653.start): ITERATION 0
2022-10-25 09:45:34,573 DEBUG [__main__.mytool.MyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,578 DEBUG [__main__.mytool.SecondaryMyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,678 INFO [__main__.mytool] (462504653.start): ITERATION 1
2022-10-25 09:45:34,679 DEBUG [__main__.mytool.MyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,680 DEBUG [__main__.mytool.SecondaryMyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,782 INFO [__main__.mytool] (462504653.start): ITERATION 2
2022-10-25 09:45:34,783 DEBUG [__main__.mytool.MyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,784 DEBUG [__main__.mytool.SecondaryMyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,885 WARNING [__main__.mytool] (462504653.finish): Shutting down.
2022-10-25 09:45:34,885 INFO [__main__.mytool] (tool.run): Finished: mytool
2022-10-25 09:45:34,889 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:34,890 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:34,892 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:34,893 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:34,898 DEBUG [__main__.mytool] (tool.write_provenance): PROVENANCE: '[
{
"activity_name": "mytool",
"activity_uuid": "2ea6b52c-e1de-4282-b0a8-a61dfeff40b9",
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},
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"time_utc": "2022-10-25T09:45:33.757"
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"environment": {
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"arguments": [
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"input": [],
"output": [],
"config": {
"MyTool": {
"config_files": [],
"iterations": 3,
"log_config": {},
"log_datefmt": "%Y-%m-%d %H:%M:%S",
"log_file": null,
"log_file_level": "INFO",
"log_format": "%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s",
"log_level": 10,
"logging_config": {},
"provenance_log": "/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/mytool.provenance.log",
"quiet": false,
"show_config": false,
"show_config_json": false,
"MyComponent": {
"value": -1
},
"SecondaryMyComponent": {
"value": -1
},
"TelescopeWiseComponent": {
"param": [
[
"type",
"*",
5.0
]
]
},
"AdvancedComponent": {
"infile": "/home/docs/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-extra/v0.3.4/gamma_prod5.simtel.zst",
"outfile": "/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/out.csv",
"value1": -1,
"MyComponent": {
"value": -1
}
}
}
},
"status": "completed",
"duration_min": 0.005899999999998684
}
]'
2022-10-25 09:45:34,909 DEBUG [__main__.mytool] (application.exit): Exiting application: mytool
see what happens when a value is set that is not of the correct type:
[16]:
try:
tool.iterations = "badval"
except TraitError as E:
print("bad value:", E)
except SystemExit as e:
assert e.code == 0, f"Tool returned with error status {e}"
bad value: The 'iterations' trait of a MyTool instance expected an int, not the str 'badval'.
Example of what happens when you change a parameter that is being “observed” in a class. It’s handler is called:
[17]:
tool.advanced.outfile = "Another.txt"
2022-10-25 09:45:34,925 WARNING [__main__.mytool.AdvancedComponent] (1780252035.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/out.csv'), 'new': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/Another.txt'), 'owner': <__main__.AdvancedComponent object at 0x7f51d2753c70>, 'type': 'change'}'
we see that the handler for outfile was called, and it receive a change dict that shows the old and new values.
create a tool using a config file:
[18]:
tool2 = MyTool()
[19]:
try:
tool2.run(argv=["--config", "Tools.json"])
except SystemExit as e:
assert e.code == 0, f"Tool returned with error status {e}"
2022-10-25 09:45:34,951 INFO [__main__.mytool] (tool.initialize): ctapipe version 0.17.0
2022-10-25 09:45:34,951 INFO [__main__.mytool] (tool.run): Starting: mytool
2022-10-25 09:45:34,971 WARNING [__main__.mytool.AdvancedComponent] (1780252035.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/foo.txt'), 'owner': <__main__.AdvancedComponent object at 0x7f51d26a0fa0>, 'type': 'change'}'
2022-10-25 09:45:34,974 DEBUG [__main__.mytool] (tool.run): CONFIG: {'MyTool': {'config_files': [PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/Tools.json')], 'iterations': 5, 'log_config': {}, 'log_datefmt': '%Y-%m-%d %H:%M:%S', 'log_file': None, 'log_file_level': 'INFO', 'log_format': '[%(name)s]%(highlevel)s %(message)s', 'log_level': 10, 'logging_config': {}, 'provenance_log': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/mytool.provenance.log'), 'quiet': False, 'show_config': False, 'show_config_json': False, 'MyComponent': {'value': -1}, 'SecondaryMyComponent': {'value': -1}, 'TelescopeWiseComponent': {'param': [('type', '*', 5.0)]}, 'AdvancedComponent': {'infile': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/something.txt'), 'outfile': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/foo.txt'), 'value1': -1, 'MyComponent': {'value': -1}}}}
2022-10-25 09:45:34,976 INFO [__main__.mytool] (462504653.start): Performing 5 iterations...
2022-10-25 09:45:34,977 INFO [__main__.mytool] (462504653.start): ITERATION 0
2022-10-25 09:45:34,978 DEBUG [__main__.mytool.MyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:34,979 DEBUG [__main__.mytool.SecondaryMyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:35,080 INFO [__main__.mytool] (462504653.start): ITERATION 1
2022-10-25 09:45:35,081 DEBUG [__main__.mytool.MyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:35,081 DEBUG [__main__.mytool.SecondaryMyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:35,183 INFO [__main__.mytool] (462504653.start): ITERATION 2
2022-10-25 09:45:35,184 DEBUG [__main__.mytool.MyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:35,184 DEBUG [__main__.mytool.SecondaryMyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:35,286 INFO [__main__.mytool] (462504653.start): ITERATION 3
2022-10-25 09:45:35,287 DEBUG [__main__.mytool.MyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:35,289 DEBUG [__main__.mytool.SecondaryMyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:35,389 INFO [__main__.mytool] (462504653.start): ITERATION 4
2022-10-25 09:45:35,390 DEBUG [__main__.mytool.MyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:35,391 DEBUG [__main__.mytool.SecondaryMyComponent] (1780252035.do_thing): Did thing
2022-10-25 09:45:35,492 WARNING [__main__.mytool] (462504653.finish): Shutting down.
2022-10-25 09:45:35,492 INFO [__main__.mytool] (tool.run): Finished: mytool
2022-10-25 09:45:35,495 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:35,496 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:35,496 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:35,497 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:35,498 INFO [__main__.mytool] (tool.write_provenance): Output:
2022-10-25 09:45:35,505 DEBUG [__main__.mytool] (tool.write_provenance): PROVENANCE: '[
{
"activity_name": "mytool",
"activity_uuid": "2ea6b52c-e1de-4282-b0a8-a61dfeff40b9",
"start": {
"time_utc": "2022-10-25T09:45:33.235"
},
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"time_utc": "2022-10-25T09:45:33.757"
},
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},
"environment": {
"CONDA_DEFAULT_ENV": null,
"CONDA_PREFIX": null,
"CONDA_PYTHON_EXE": null,
"CONDA_EXE": null,
"CONDA_PROMPT_MODIFIER": null,
"CONDA_SHLVL": null,
"PATH": "/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/envs/v0.17.0/bin:/home/docs/.pyenv/shims:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/docs/.conda/bin:/home/docs/.pyenv/bin",
"LD_LIBRARY_PATH": null,
"DYLD_LIBRARY_PATH": null,
"USER": null,
"HOME": "/home/docs",
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},
"arguments": [
"/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/envs/v0.17.0/lib/python3.8/site-packages/ipykernel_launcher.py",
"-f",
"/tmp/tmp91c0dixs.json",
"--HistoryManager.hist_file=:memory:"
],
"start_time_utc": "2022-10-25T09:45:34.968"
},
"input": [],
"output": [],
"config": {
"MyTool": {
"config_files": [
"/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/Tools.json"
],
"iterations": 5,
"log_config": {},
"log_datefmt": "%Y-%m-%d %H:%M:%S",
"log_file": null,
"log_file_level": "INFO",
"log_format": "[%(name)s]%(highlevel)s %(message)s",
"log_level": 10,
"logging_config": {},
"provenance_log": "/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/mytool.provenance.log",
"quiet": false,
"show_config": false,
"show_config_json": false,
"MyComponent": {
"value": -1
},
"SecondaryMyComponent": {
"value": -1
},
"TelescopeWiseComponent": {
"param": [
[
"type",
"*",
5.0
]
]
},
"AdvancedComponent": {
"infile": "/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/something.txt",
"outfile": "/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/foo.txt",
"value1": -1,
"MyComponent": {
"value": -1
}
}
}
},
"status": "completed",
"duration_min": 0.00901666666674572
}
]'
2022-10-25 09:45:35,518 DEBUG [__main__.mytool] (application.exit): Exiting application: mytool
[20]:
print(tool2.advanced.infile)
/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/something.txt
[21]:
print(tool2.config)
{'MyTool': {'config_files': ['Tools.json'], 'log_level': 'DEBUG'}, 'AdvancedComponent': {'infile': 'something.txt', 'outfile': 'foo.txt'}, 'attach_subarray': <LazyConfigValue {}>}
[22]:
tool2.is_setup
[22]:
True
[23]:
tool3 = MyTool()
[24]:
tool3.is_setup
[24]:
False
[25]:
tool3.initialize(argv=[])
[26]:
tool3.is_setup
[26]:
False
[27]:
tool3
[27]:
MyTool
do some things and stuff
| config_files | [] | (default: traitlets.Undefined) |
|---|---|---|
| iterations | 5 | Number of times to run (default: 5) |
| log_config | {} | (default: traitlets.Undefined) |
| log_datefmt | %Y-%m-%d %H:%M:%S | The date format used by logging formatters for %(asctime)s (default: %Y-%m-%d %H:%M:%S) |
| log_file | None | Filename for the log (default: None) |
| log_file_level | INFO | Logging Level for File Logging (default: INFO) |
| log_format | [%(name)s]%(highlevel)s %(message)s | The Logging format template (default: [%(name)s]%(highlevel)s %(message)s) |
| log_level | 30 | Set the log level by value or name. (default: 30) |
| logging_config | {} |
Configure additional log handlers.
The default stderr logs handler is configured by the
log_level, log_datefmt and log_format settings.
This configuration can be used to configure additional handlers
(e.g. to output the log to a file) or for finer control over the
default handlers.
If provided this should be a logging configuration dictionary, for
more information see:
https://docs.python.org/3/library/logging.config.html#logging-config-dictschema
This dictionary is merged with the base logging configuration which
defines the following:
* A logging formatter intended for interactive use called
``console``.
* A logging handler that writes to stderr called
``console`` which uses the formatter ``console``.
* A logger with the name of this application set to ``DEBUG``
level.
This example adds a new handler that writes to a file:
.. code-block:: python
c.Application.logging_config = {
'handlers': {
'file': {
'class': 'logging.FileHandler',
'level': 'DEBUG',
'filename': ' |
| provenance_log | / |
(default: traitlets.Undefined) |
| quiet | False | (default: False) |
| show_config | False | Instead of starting the Application, dump configuration to stdout (default: False) |
| show_config_json | False | Instead of starting the Application, dump configuration to stdout (as JSON) (default: False) |
Components: MyTool, MyComponent, AdvancedComponent, SecondaryMyComponent, TelescopeWiseComponent
[28]:
tool.setup()
tool
2022-10-25 09:45:35,603 WARNING [__main__.mytool.AdvancedComponent] (1780252035.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/ctapipe/checkouts/v0.17.0/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7f51d27539a0>, 'type': 'change'}'
[28]:
MyTool
do some things and stuff
| config_files | [] | (default: traitlets.Undefined) |
|---|---|---|
| iterations | 3 | Number of times to run (default: 5) |
| log_config | {} | (default: traitlets.Undefined) |
| log_datefmt | %Y-%m-%d %H:%M:%S | The date format used by logging formatters for %(asctime)s (default: %Y-%m-%d %H:%M:%S) |
| log_file | None | Filename for the log (default: None) |
| log_file_level | INFO | Logging Level for File Logging (default: INFO) |
| log_format | %(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s | The Logging format template (default: [%(name)s]%(highlevel)s %(message)s) |
| log_level | 10 | Set the log level by value or name. (default: 30) |
| logging_config | {} |
Configure additional log handlers.
The default stderr logs handler is configured by the
log_level, log_datefmt and log_format settings.
This configuration can be used to configure additional handlers
(e.g. to output the log to a file) or for finer control over the
default handlers.
If provided this should be a logging configuration dictionary, for
more information see:
https://docs.python.org/3/library/logging.config.html#logging-config-dictschema
This dictionary is merged with the base logging configuration which
defines the following:
* A logging formatter intended for interactive use called
``console``.
* A logging handler that writes to stderr called
``console`` which uses the formatter ``console``.
* A logger with the name of this application set to ``DEBUG``
level.
This example adds a new handler that writes to a file:
.. code-block:: python
c.Application.logging_config = {
'handlers': {
'file': {
'class': 'logging.FileHandler',
'level': 'DEBUG',
'filename': ' |
| provenance_log | / |
(default: traitlets.Undefined) |
| quiet | False | (default: False) |
| show_config | False | Instead of starting the Application, dump configuration to stdout (default: False) |
| show_config_json | False | Instead of starting the Application, dump configuration to stdout (as JSON) (default: False) |
Components: MyTool, MyComponent, AdvancedComponent, SecondaryMyComponent, TelescopeWiseComponent